overview

This section provides an overview of the tools available in NGS statter package. The commands in this package are divided into the following groups based on their purpose and input data types.

command groups

• alignment
  • bam
  • STAR
• crosslink
  • csv-meta-example
  • count-crosslinks
  • crosslink-line-plot
  • crosslink-heatmap
• fastq
  • parse-read-length
  • plot-read-length
• flexbar
  • fix-header
• genetype
  • parse-gene-type-read-length
  • plot-gene-type-read-length
• kraken
  • collect-reports
• sample
  • sample-stats
  • compile-stats